nucleic.figures module

nucleic.figures.GridSpec

alias of nucleic.figures.Grid

nucleic.figures.plot_stratton_spectrum(spectrum: nucleic.SnvSpectrum, kind: str = 'count', title: str = '') → Tuple[toyplot.canvas.Canvas, Tuple[toyplot.canvas.Canvas.cartesian, toyplot.canvas.Canvas.cartesian]]

Plot the trinucleotide spectrum of mutation.

Parameters:

• spectrum – single nucleotide variants in trinucleotide contexts.
• kind – whether to plot data as counts or as a probability mass.
• title – the plot title.

Note

The spectrum must be of pyrimidine notation.