Index

C

contexts() (nucleic.SnvSpectrum method)

counts (nucleic.SnvSpectrum attribute) counts_as_array() (nucleic.SnvSpectrum method)

D

DEFAULT_SNV_COLOR (in module nucleic.constants) DictMostCommonMixin (class in nucleic.util) DictNpArrayMixin (class in nucleic.util)

DictPrettyReprMixin (class in nucleic.util) DNA (class in nucleic) DNA_IUPAC_NONDEGENERATE (in module nucleic.constants) dna_kmers() (in module nucleic.sequence)

F

fetch_cosmic_signatures() (in module nucleic)

G

GridSpec (in module nucleic.figures)

H

hamming_circle() (in module nucleic.sequence)

I

is_purine() (nucleic.DNA method)

is_pyrimidine() (nucleic.DNA method)

K

keys() (nucleic.util.DictNpArrayMixin method)

L

LONGFORM_LABEL (in module nucleic.constants)

M

mass() (nucleic.SnvSpectrum method)

most_common() (nucleic.util.DictMostCommonMixin method)

N

Notation (class in nucleic) Nt() (in module nucleic) nucleic (module), [1]

nucleic.constants (module) nucleic.figures (module) nucleic.sequence (module) nucleic.util (module)

P

plot_stratton_spectrum() (in module nucleic.figures)

S

Snv() (in module nucleic) snvs() (nucleic.SnvSpectrum method)

SnvSpectrum (class in nucleic) split_by_notation() (nucleic.SnvSpectrum method) STRATTON_SNV_COLOR (in module nucleic.constants)

T

to() (nucleic.DNA method)

V

values() (nucleic.util.DictNpArrayMixin method)

W

weights_as_array() (nucleic.SnvSpectrum method)