nucleic.constants module¶
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nucleic.constants.
DNA_IUPAC_NONDEGENERATE
= 'ACGT'¶ The non-degenerate IUPAC DNA bases.
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nucleic.constants.
STRATTON_SNV_COLOR
= {'A→C': '#EDBFC2', 'A→G': '#97D54C', 'A→T': '#CBC9C8', 'C→A': '#52C3F1', 'C→G': '#231F20', 'C→T': '#E62223', 'G→A': '#E62223', 'G→C': '#231F20', 'G→T': '#52C3F1', 'T→A': '#CBC9C8', 'T→C': '#97D54C', 'T→G': '#EDBFC2'}¶ The colors of all single nucleotide variants used in Stratton et. al. papers.
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nucleic.constants.
DEFAULT_SNV_COLOR
= {'A→C': '#D53E4F', 'A→G': '#FC8D59', 'A→T': '#FEE08B', 'C→A': '#3288BD', 'C→G': '#99D594', 'C→T': '#E6F598', 'G→A': '#E6F598', 'G→C': '#99D594', 'G→T': '#3288BD', 'T→A': '#FEE08B', 'T→C': '#FC8D59', 'T→G': '#D53E4F'}¶ The colors of all single nucleotide variants.
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nucleic.constants.
LONGFORM_LABEL
= {'A→C': 'A:T→C:G', 'A→G': 'A:T→G:C', 'A→T': 'A:T→T:A', 'C→A': 'C:G→A:T', 'C→G': 'C:G→G:C', 'C→T': 'C:G→T:A', 'G→A': 'G:C→A:T', 'G→C': 'G:C→C:G', 'G→T': 'G:C→T:A', 'T→A': 'A:T→T:A', 'T→C': 'A:T→G:C', 'T→G': 'A:T→C:G'}¶ A mapping between shortform canonical single nucleotides and longform.